chr4_1

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

21.9

E-value:

0.0017

From sequence:

45273

To sequence:

45148

Alignments:

                ::::::::::::::::::::::....:::::::::::::::::::::::::::::::::::::.....::::..:.:::::::::::::::::::::: CS
  RF02142    61 GGAGGAAGAAAAACAAAGGCAG....GAAGUGGCgGCgGcCUGACGGUGCGUGUGUGUCUgcG.....gaGA..A.GGGAGGGAGccguUuCAaUCUC 146  
                G AG A GAAAAA  A G CAG    GA    GC G  G  UG   GUG GUGUGUGU Ug G     gaGA    GGGAGGG G c + uCA  C C
     chr4 45273 GAAGAAGGAAAAAGUACGACAGcgcgGAGAGAGCAGGCGAGUGUGUGUGUGUGUGUGUGUGAGcgcggGAGAgcGcGGGAGGGCGGCUGGUCAUGCCC 45176
                223333344444444444444421112222222222222333333333333333333332221222222222223368899999999999***99999 PP

                ::::::::::::::::::::::::::::::: CS
  RF02142   147 uuCUUGUUUUuccaAAcUUCAaGGUCuagGC 177  
                 uCU GUU   c aAA U  AaG UCu gGC
     chr4 45175 AUCUCGUU---CAAAAAUCGAAGUUCUCGGC 45148
                99998875...67788888899999988876 PP

>>

RNAfold
>chr4_1
UGAAGAAGUUUCCGUGGGCGAUGAGCGCCGAGAACUUCGAUUUUUGAACG
AGAUGGGCAUGACCAGCCGCCCUCCCGCGCUCUCCCGCGCUCACACACAC
ACACACACACACUCGCCUGCUCUCUCCGCGCUGUCGUACUUUUUCCUUCU
UCCGCUUUUGCGGUGGAAGUGCGGCAUAC
............((((((.((.(((((.((((...(((((...)))))...((.((((..........))))))..((((......)))).....................))))..))))))))))))).(((((((((.......(((.((((....)))).))))))))))))... (-53.40)

Length sequence

: 179

Length match:

124