chr4_10

cmsearch-Rfam

Family :

mir-1280

Id:

RF02013

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02013

Description:

not description

Score:

43.6

E-value:

3.7e-05

From sequence:

283367

To sequence:

283278

Alignments:

                             v  v                                                    v v              NC
                 ::<<<<<<<<<-<-<<<<---<<<--<<<<<<<<-<<<-<-~~~~~~>->>>->>>>>>>>-->>>>>>>>>>>>>>>>>:::: CS
  RF02013      1 ucuGucccaccGcUGccacccuccccccuGccucAGuGUGc*[16]*CUCaCAgaggCaggcUggauggCgggugggaCaAcAG 94    
                   UG:C:C:CC   :CC:CCCUCCCC::::C:UC :U: :       : :A:AGA:G::::  GGA:G :GGG:G:G:CAA AG
     chr4 283367 CUUGCCUCCCC---CCCCCCCUCCCCAUCUCUUCUCUCGCG*[16]*GCGAGAGAAGAGAUGGGGAGG-GGGGGGAGGCAAGAG 283278
                 ***********...444444555555555555555554332...5..334555555555555555555.55************* PP

>>

RNAfold
>chr4_10
CCUCUUGCCUCCCCCCCCUCCCCAUCUCUUCUCUCGCGCUGGGGGUAAGC
AAGCGCGAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAGAG
.((((((((((((((((((((((((((((((((((((((((........).))))))))))))))))))))))...))))))))))))))))) (-86.00)

Length sequence

: 93

Length match:

88