chr4_15

cmsearch-Rfam

Family :

mir-197

Id:

RF00707

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00707

Description:

not description

Score:

40.1

E-value:

0.00017

From sequence:

154474

To sequence:

154546

Alignments:

                    v        v                                                   v        v    NC
                 <<<<<<<<<<<<<<<<<<<<<-..-<<<<--<<<<<<____>>>->>>-->>>>-->>>>>>>>>>>>>>>>>>>>> CS
  RF00707      1 gGccguGccGGGuaGaGagGGC..AGuGgGAGGuaaGAucUCuuCaCCcUuCaCCACCcuCuCuaCCCggCacggCc 75    
                 :G: G:G:: GG :GAGA:GG   AG:::GAGG A:G + UC:U  CC  :::CC CC:UCUC: CC ::C:C :C:
     chr4 154474 GGAAGGGAGGGGAGGAGAAGGGggAGGGGGAGG-AGGCGGUCCU--CCUCCUCCCCCCUUCUCC-CCUCUCCCCUCU 154546
                 *********************888899999988.5666666765..7777888888********.************ PP

>>

RNAfold
>chr4_15
GGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUCCUCCUCCUC
CCCCCUUCUCCCCUCUCCCCUCUC
(((.((((((((.(((((((((((((((((((((.....)))))))))).))))))))))))))))))).))). (-63.70)

Length sequence

: 74

Length match:

71