chr4_16

cmsearch-Rfam

Family :

mir-197

Id:

RF00707

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00707

Description:

not description

Score:

36.8

E-value:

0.001

From sequence:

154544

To sequence:

154477

Alignments:

                      v v                 v     v vv       vv  v     v                 v v      NC
                 <<<<<<<<<<<<<<<<<<<<<--<<<<--<<<<<<__~~~~~>>>->>>-->>>>-->>>>>>>>>>>>>>>>>>>>> CS
  RF00707      1 gGccguGccGGGuaGaGagGGCAGuGgGAGGuaaGAu*[2]*CuuCaCCcUuCaCCACCcuCuCuaCCCggCacggCc 75    
                 :G::: G : GG:::AG:GGG AG: :GAG +          C     CCU: :CC CCC:CU:::CC : C :::C:
     chr4 154544 AGGGGAGAGGGGAGAAGGGGGGAGGAGGAGGA----C*[2]*CC---UCCUCCCCCUCCCCCUUCUCCUCCCCUCCCU 154477
                 *********************99987766654....4..4..43...45678899*********************** PP

>>

RNAfold
>chr4_16
GGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUCCUCCUCCUC
CCCCCUUCUCCCCUCUCCCCUCUCC
(((.((((((((.(((((((((((((((((((((.....)))))))))).))))))))))))))))))).))).. (-63.70)

Length sequence

: 75

Length match:

66