chr4_17

cmsearch-Rfam

Family :

mir-197

Id:

RF00707

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00707

Description:

not description

Score:

33.5

E-value:

0.0065

From sequence:

65774

To sequence:

65863

Alignments:

                                         v       vv        vv        v                         NC
                <<<<<<<<<<<<<<<<<<<<<-.-<<<<--<<<<<<~~~~~~>>>->>>-->>>>-->>>>>>>>>>>>>>>>>>>>> CS
  RF00707     1 gGccguGccGGGuaGaGagGGC.AGuGgGAGGuaaG*[ 4]*CuuCaCCcUuCaCCACCcuCuCuaCCCggCacggCc 75   
                ::C:G:G   G::AGAGAG:G  AG G:GAGG:A G      C   :CCC :C CC C:CUCUCU::C   C:C:G::
     chr4 65774 AACGGAG---GAGAGAGAGAGAgAGAGGGAGGGAGG*[26]*C--UCCCCCCCCCCUCUCUCUCUCUC---CUCCGUU 65863
                8877665...55556666666567999999998765...9..2..34555566666666666666555...5667788 PP

RNAfold
>chr4_17
ACGGAGGAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAGAAGCGCGCA
CACGCACACUCCCCCCCCCCUCUCUCUCUCUCCUCCGUU
(((((((((((((((((((...(((.(((.....(((((....(((......)))...)))))))))))))))))))))))))))))). (-58.20)

Length sequence

: 89

Length match:

88