chr4_18

cmsearch-Rfam

Family :

mir-197

Id:

RF00707

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00707

Description:

not description

Score:

35.0

E-value:

0.0027

From sequence:

65863

To sequence:

65774

Alignments:

                                    v                               v                     NC
                <<<<<<<<<<<<<<<<<<<<<--<<<<--<<<<~~~~~~>->>>-->>>>-->>>>>>>>>>>>>>>>>>>>> CS
  RF00707     1 gGccguGccGGGuaGaGagGGCAGuGgGAGGua*[ 8]*uCaCCcUuCaCCACCcuCuCuaCCCggCacggCc 75   
                ::C:G:G::G:G:::::::GG   :G:G GG::      :C:CCCU:C: C  C:::::::C:C::C:C:G::
     chr4 65863 AACGGAGGAGAGAGAGAGAGG--GGGGGGGGAG*[26]*CCUCCCUCCCUCU-CUCUCUCUCUCUCCUCCGUU 65774
                ***999999887655555543..4444334443...9..5666766666664.55555556888999999*** PP

>>

RNAfold
>chr4_18
ACGGAGGAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAGAAGCGCGCA
CACGCACACUCCCCCCCCCCUCUCUCUCUCUCCUCCGUU
(((((((((((((((((((...(((.(((.....(((((....(((......)))...)))))))))))))))))))))))))))))). (-58.20)

Length sequence

: 89

Length match:

88