chr4_2

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

32.2

E-value:

0.0038

From sequence:

154480

To sequence:

154545

Alignments:

                                       v                               v                       NC
                 :<<<<<<----<<<<<<<<<<<<-----------<<<<~~~~~~>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggC*[15]*GccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G:G:GGA    GGAG::GG:GG  GG G      G:G:      :C:C CU CU CC:CC::CUCC CUCUCC:C: 
     chr4 154480 GAGGGGA----GGAGAAGGGGGAGGGGGA----GGAGG*[ 4]*CCUC-CUCCUCCCCCCUUCUCCCCUCUCCCCUC 154545
                 *******....********9997544332....23332...4..4444.6667799********************* PP

>>

RNAfold
>chr4_2
GGAGGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUCCUCCUC
CUCCCCCCUUCUCCCCUCUCCCCUCUCCCACACAC
(((((..((((((((.(((((((((((((((((((((.....)))))))))).))))))))))))))))))).)))))....... (-67.10)

Length sequence

: 85

Length match:

64