chr4_22

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

36.2

E-value:

0.00026

From sequence:

154557

To sequence:

154464

Alignments:

                                      v              v   v                       v   v              v             NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<~~~~~~>-->>>>>>>>>>>->>>>>>>>>>-->>>->>>->>>>>: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaAC*[72]*GCCuCCCAUuCCuAucguUCucaggugCUCCuuCCucuuCC 162   
                 GU  G    ::::AG::  AG GG ::::AG:::G  AGG : :GGA C      GCCUCC: : CCU  C:::CU::::  C CC::CC:::: C
     chr4 154557 GUGUGUGUGGGAGAGGGG-AGAGGGGAGAAGGGGG-GAGGAGGAGGACC*[ 0]*GCCUCCUCCCCCU--CCCCCUUCUCCUCCCCUCCCUUCCUC 154472
                 *************99995.7888889999999988.5999999999988......8899999999997..789999999999************** PP

                          NC
                 :::::::: CS
  RF01911    163 UUuuaguU 170   
                  UU + +U
     chr4 154471 CUUCUCCU 154464
                 ******** PP

>>

RNAfold
>chr4_22
CAUACCGGUGUGAGUUGUGAGAGAGACGGAGGCGGGGAGGAGAAGGAGGA
AGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUCCUCCUCCUCCCC
CCUUCUCCCCUCUCCCCUCUCCCACACACACUCAGAUCGAUGGACAGACG
AAUACGCAAAGGGUCUCAA
(((..((((.(((((((((.......((....))(((((....(((.(((...(((((((((((..(((((((((((((((.....))))))))))))))))))))))))))))))))))))).)))).))))).)))))))...((((.............))))... (-87.70)

Length sequence

: 169

Length match:

92