chr4_23

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

32.7

E-value:

0.0018

From sequence:

65868

To sequence:

65784

Alignments:

                          v                                                                v            NC
                ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<~~~~~~>>>>>->>>>>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911     1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGa*[89]*uCCuAucguUCucaggugCUCCuuCCucuuCCUUuuaguU 170  
                 U+AG A G:  :AGA:AGAGAG+  ::G G : :G : G:      :C :  : : C C:: U CUCC:UCC:  :C  U U ++U
     chr4 65868 AUAAGAACGGAGGAGAGAGAGAGAGGGGGGGGGGAGUGUGC*[ 4]*GCGCGCUUCUCUCCCUUCCUCCCUCCCUCUCUCUCUCUCU 65784
                *************************9999999999988877...7..6778889999999999************************ PP

>>

RNAfold
>chr4_23
AGAAACUCAACGAGGAAAGGAGCGAAACAUCCAACGGAGGAGAGAGAGAG
AGAGAGGGAGGGAGGAAGGGAGAGAAGCGCGCACACGCACACUCCCCCCC
CCCUCUCUCUCUCUCCUCCGUUCUUAUUUGUGCAUCGUCAUCUCUGUGGG
UGUCAAGCGCCUCUCUCUCG
..........((((((.(((.((...(((((((.((((((.(((((.(((((((((((((((.((..(((((....(((......)))...)))))..)))))))))))))))))))).((.(......).))....)).)))))))))))))...)).))).)).)))) (-80.10)

Length sequence

: 170

Length match:

83