chr4_24

cmsearch-Rfam

Family :

mir-249

Id:

RF00821

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00821

Description:

not description

Score:

32.8

E-value:

0.00034

From sequence:

209183

To sequence:

209278

Alignments:

                                                                                                            NC
                 ::::::::::::::::::<<<<.----<<<<<<<<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>>>>>>>>---....>>>>:: CS
  RF00821      1 aauuuUuauuuUuUauaCccuc.uAugcgaCuaGCaaCGCuCaaaaGuc*[33]*gaCuuuuGaGCGuuGCuaGucgAAa....gaggau 112   
                 A+  UUU+UUUUUU+UACCC:C U U+:GACU::::A GC:CAA:::::      :::::UUG:GC U::::AGUC: A     G:GG U
     chr4 209183 AUCCUUUUUUUUUUUUACCCCCuUUUAGGACUCAGUAAGCACAACGCAA*[12]*UUGCGUUGUGCUUACUGAGUCCGAGacgcGGGGCU 209278
                 ********************9999999****************999875...9..578999****************999999******* PP

RNAfold
>chr4_24
CCCCUACAUCCUUUUUUUUUUUUACCCCCUUUUAGGACUCAGUAAGCACA
ACGCAAGAACGCCUAUCCUUGCGUUGUGCUUACUGAGUCCGAGACGCGGG
GCUGUUUCUCA
........................(((((.(((.(((((((((((((((((((((((..........))))))))))))))))))))))).))).).)))).......... (-52.30)

Length sequence

: 111

Length match:

94