chr4_25

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

40.8

E-value:

3.1e-06

From sequence:

283278

To sequence:

283369

Alignments:

                                              v          v          v          v                                NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<~~~~~~>>>->>>>>>>>>>->->>>>>>>>>>>>>>>>>>--->>>>>:: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaCua*[12]*uaGAuGuuaGuaGGCGUuGuGggaaGggcgGcgacgauGaacgua 100   
                  UC:U:C  : C:CC:CCCU:C:CA::  C: C:CU::C: U:      :A  :G::AG: :    ::UG:G:AGGG:GG:G :GA G:A:G  
     chr4 283278 CUCUUGC--CUCCCCCCCCUCCCCAUCU-CUUCUCUCGCGCUG*[ 8]*CAAGCGCGAGAGA-AGAGAUGGGGAGGGGGGGGGGGAGGCAAGAG 283369
                 *******..99***************85.44446666666655...5..4444666666633.3458*************************** PP

>>

RNAfold
>chr4_25
UCCCUCUUGCCUCCCCCCCCUCCCCAUCUCUUCUCUCGCGCUGGGGGUAA
GCAAGCGCGAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAGAGGGAA
(((((((((((((((((((((((((((((((((((((((((((........).))))))))))))))))))))))...)))))))))))))))))))). (-94.90)

Length sequence

: 99

Length match:

90