chr4_26

cmsearch-Rfam

Family :

mir-268

Id:

RF00834

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00834

Description:

not description

Score:

34.2

E-value:

0.00054

From sequence:

154559

To sequence:

154464

Alignments:

                              v      v v                                                     v v      v           NC
                 ::::::::::::<<<<<<<-<<<<<<-<<<<<<<<<---<-<<<<<________>>>>>->..>>>>>>>>>->>>>>>->>>>>>>::::::::: CS
  RF00834      1 GGAAGUGgCUUUgaaGcgGCaagaauUaGaaGcaGuUUGGuGucgGacacACuACcgaCuC..aCugCuuCuUguuuuuUCcgCuucuUuUuCUuu 94    
                 G   GUG  U  G  ::GG  : : : AGAAG::G:  GG G::GGAC   CU CC::C C  :C::CUUCU : : : UCC::  CU  UUCU +
     chr4 154559 GAGUGUGUGUGGGAGAGGGGAGAGGGGAGAAGGGGGGAGGAGGAGGACCGCCU-CCUCCCCcuCCCCCUUCUCCUCCCCUCCCUUCCUCCUUCUCC 154465
                 **9999999999999999999999999*********99*********999999.888887767999****************************** PP

                   NC
                 : CS
  RF00834     95 u 95    
                 U
     chr4 154464 U 154464
                 * PP

>>

RNAfold
>chr4_26
GGAGAAGGAGGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUC
CUCCUCCUCCCCCCUUCUCCCCUCUCCCCUCUCCCACACACACUC
......(((((..((((((((.(((((((((((((((((((((.....)))))))))).))))))))))))))))))).)))))........... (-68.20)

Length sequence

: 95

Length match:

94