chr4_27

cmsearch-Rfam

Family :

mir-326

Id:

RF00719

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00719

Description:

not description

Score:

31.8

E-value:

0.0067

From sequence:

170685

To sequence:

170772

Alignments:

                       v     v    v                       v                   v                   v    v    v     NC
                 :::<<<<<<<<-<<<<<<<<<<<<<<<<<<<<----<-<<<<<<__...__________>>>>>>>->>>>>>>>>>>>>>>>>>>>>>>>>>>>: CS
  RF00719      1 cucauccGccuGccGGGcuGGgGGcaGGGcccUUGUGAaGGcGgGU...ugUGcucaGAcCgCCuCUgggCCCugCCcCCagCCCggaggCggauU 93    
                  UC:::+    G+::GG :GG: G:AGGG::   G GA:GG G:G     GUG  +AGA:C CC:C  ::CCCU:C :CC: CC::      :::U
     chr4 170685 AUCGCGA----GAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGCaagAGUGAAAAGAGCCCCCCCUCUCCCUCCUUCCCCCCUC------CGCU 170770
                 ****975....4677777888888888888888888********972225799999999*******99999999999999977777......59** PP

                    NC
                 :: CS
  RF00719     94 cA 95    
                  A
     chr4 170771 GA 170772
                 ** PP

RNAfold
>chr4_27
CAUAUCGCGAGAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGCAAGAG
UGAAAAGAGCCCCCCCUCUCCCUCCUUCCCCCCUCCGCUGACCUC
....(((((.(((.((.(((((((((((((((.(((.(((..(.............)..))))))))))))))))))))))))))))).)).... (-56.60)

Length sequence

: 95

Length match:

86