chr4_3

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

30.8

E-value:

0.0086

From sequence:

170692

To sequence:

170771

Alignments:

                    v                               v                   v                          v    NC
                 :<<<<<<----<<<<<<<<<<<<-----------<<<<_______________>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggCcaGgGcgcuGUCUcAGccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G:G GGA   GGGA G::G:G:G G  G  G  AG GC AG+G+G       AGC C C+ CUC:C:C::C UCC C CUCC C:G
     chr4 170692 GAGAGGA---GGGAGGGAGGGAGGGAGGGAGGGAGCGCAAGAGUGAAA--AGAGCCC-CCCCUCUCCCUCCUUCCCCCCUCCGCUG 170771
                 *******...9*************999999999999999998887643..3459988.8889************************ PP

>>

RNAfold
>chr4_3
GAGAGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGCAAGAGUGAAAAGA
GCCCCCCCUCUCCCUCCUUCCCCCCUCCGCUGACC
...((.((((((.(((((((((((((((.(((.((...............)).))).))))))))))))))))))))).)).... (-55.40)

Length sequence

: 85

Length match:

78