chr4_30

cmsearch-Rfam

Family :

mir-328

Id:

RF00772

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00772

Description:

not description

Score:

33.9

E-value:

0.00068

From sequence:

170693

To sequence:

170781

Alignments:

                   v      v               v               v              v      v              NC
                 :<<<<<-<<<<<<<<<<<<<<<<-<<<<<-<~~~~~~>>>>>>>>>>>>>>>>>>>>>>->>>>>:::::::::::: CS
  RF00772      1 UGGggcaGggGGGcaGgggGGGcUcAgGgAG*[13]*CcCcUggCCCcccCugCCCccCCgccCCcugUuccaaaau 84    
                  G GG:+GG+GGG::GG:GGG:: : GGGAG      CCCC :::CCC:CC::CCC CCC:CC C+   ++C+ A U
     chr4 170693 AGAGGAGGGAGGGAGGGAGGGAGGGAGGGAG*[19]*CCCCCUCUCCCUCCUUCCC-CCCUCCGCUGACCUCUCAGU 170781
                 ********************99999999999...8..5555567777777777777.889***************** PP

>>

RNAfold
>chr4_30
GAGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGCAAGAGUGAAAAGAGCCC
CCCCUCUCCCUCCUUCCCCCCUCCGCUGACCUCUCAGU
..((((((.(((((((((((((((.(((.((...............)).))).)))))))))))))))))))))(((((....))))) (-57.50)

Length sequence

: 88

Length match:

87