chr4_35

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

27.2

E-value:

0.0011

From sequence:

154473

To sequence:

154550

Alignments:

                                                                                                     NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<~~~~~~>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCA*[59]*UGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 A+   G GA G GA+ GAGA :GGG:  AGG :GAG A      U C C: CCUC :CCC:  CUCC+ UCUC CCUCU+   
     chr4 154473 AGGAAGGGAGGGGAG-GAGAAGGGGG--AGGGGGAGGA*[ 5]*UCCUCCUCCUC-CCCCCUUCUCCCCUCUCCCCUCUCCCA 154550
                 ***********8888.***8777776..7777777665...9..56667777777.4566677******************** PP

>>

RNAfold
>chr4_35
GAGAGAGACGGAGGCGGGGAGGAGAAGGAGGAAGGGAGGGGAGGAGAAGG
GGGAGGGGGAGGAGGCGGUCCUCCUCCUCCCCCCUUCUCCCCUCUCCCCU
CUCCCACACACACUCAGAUCGAUGGACAGACGAAU
....((....((((.(.(..(((((.((.(((...(((((((((((..(((((((((((((((.....))))))))))))))))))))))))))))))))))))..).).).)))...))............... (-74.50)

Length sequence

: 135

Length match:

76