chr4_36

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

28.8

E-value:

0.00036

From sequence:

154563

To sequence:

154455

Alignments:

                                     v                                                         v                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---..~~~~~~---->>>>>>->>>>.>>->>>>>>>->>>::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUG..*[45]*cCuCCCaUGCACUGC.cUCuUCCCuGGCUCCuuucuCuccucu 132   
                 A  UG  + UG G++GGAGA :GGGA: :GG AGA: ::G+GA G        CC  CC:: : CU C C:C:UCCC:+ CUCCUU ++CUCC+C 
     chr4 154563 AUCUGAGUGUGUGUGGGAGA-GGGGAGAGGGGAGAAGGGGGGAGGag*[16]*CCCUCCCCCUUCUCCuCCCCUCCCUUCCUCCUUCUCCUCCCCG 154459
                 *******************5.9*****99999999988887877642...7..44446777777998845689******9**************** PP

                      NC
                 :::: CS
  RF00690    133 uUuu 136   
                 + U+
     chr4 154458 CCUC 154455
                 **** PP

>>

RNAfold
>chr4_36
UGUGAGAGAGACGGAGGCGGGGAGGAGAAGGAGGAAGGGAGGGGAGGAGA
AGGGGGAGGGGGAGGAGGCGGUCCUCCUCCUCCCCCCUUCUCCCCUCUCC
CCUCUCCCACACACACUCAGAUCGAUGGACAGACGA
(((....((....((((.(.(..(((((.((.(((...(((((((((((..(((((((((((((((.....))))))))))))))))))))))))))))))))))))..).).).)))...)).....)))..... (-76.00)

Length sequence

: 136

Length match:

107