chr4_38

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

31.4

E-value:

5.8e-05

From sequence:

65864

To sequence:

65786

Alignments:

                                                                                                    NC
                ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<~~~~~~>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCA*[59]*UGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136  
                +A+ GG+G  GAGA++GAGA :GGG :G: :  G+GC        GC C  : : : CCC:  CUCC+U C++ +CUCU+U U
     chr4 65864 GAACGGAGGAGAGAGAGAGAGGGGGGGGGGAGUGUGCG*[ 2]*UGCGCGCUUCUCUCCCUUCCUCCCUCCCUCUCUCUCUCU 65786
                **********************************9996...7..6999999******************************** PP

>>

RNAfold
>chr4_38
AAGGAGCGAAACAUCCAACGGAGGAGAGAGAGAGAGAGAGGGAGGGAGGA
AGGGAGAGAAGCGCGCACACGCACACUCCCCCCCCCCUCUCUCUCUCUCC
UCCGUUCUUAUUUGUGCAUCGUCAUCUCUGUGGGUG
.(.(((((........((((((((((((((((((((...(((.(((.....(((((....(((......)))...)))))))))))))))))))))))))))))))........))).)).)(((((....))))) (-64.30)

Length sequence

: 136

Length match:

77