chr4_39

cmsearch-Rfam

Family :

mir-497

Id:

RF00793

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00793

Description:

not description

Score:

43.3

E-value:

1.6e-05

From sequence:

283276

To sequence:

283374

Alignments:

                                                          v        v                                              NC
                 :::::::::<<<<<<<<-<<<-<-<<<<-<<<<-<<<<<<<<<~~~~~~>>>>>>>>>->>>>->>>>->->>>->>>>>>>>::::::::::::: CS
  RF00793      1 ccacuCcaguCccgCccCCGCcCCagCaGCaCaCuGuGGuuuG*[20]*CaaaCCaCaCuGuGGuGuuAGAGCGAggGuggGgGAGGcAcCgcuga 110   
                 CC  +    : CC:CCCCC:CCCCA:C: ::C:CU:::G:U G      C A:C:::A :G::G:G:U G G:G GGG:GG :GAGGCA     GA
     chr4 283276 CCCUCUUGCCUCCCCCCCCUCCCCAUCUCUUCUCUCGCGCUGG*[ 7]*CAAGCGCGAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAGAGGGA 283372
                 ****************************************966...9..669******************************************** PP

                    NC
                 :: CS
  RF00793    111 gg 112   
                 +G
     chr4 283373 AG 283374
                 ** PP

>>

RNAfold
>chr4_39
UACCUUCCCUCUUGCCUCCCCCCCCUCCCCAUCUCUUCUCUCGCGCUGGG
GGUAAGCAAGCGCGAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAGAG
GGAAGGUAACGG
((((((((((((((((((((((((((((((((((((((((((((((((........).))))))))))))))))))))))...))))))))))))))))))))))))).... (-104.70)

Length sequence

: 112

Length match:

97