chr4_4

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

30.8

E-value:

0.0087

From sequence:

65781

To sequence:

65861

Alignments:

                 v   v                                                                           v   v  NC
                :<<<<<<----<<<<<<<<<<<<-----------<<<<_______________>>>>------>>>>>>>>>>>>.---->>>>>>: CS
  RF00942     1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggCcaGgGcgcuGUCUcAGccCGcuUCuCCCcCCaCCuCC.UCUCuCCuCaG 86   
                G GAG     G:GAG::GGAGGG GG +  G  AG    AG GCGC   C CA   C CU C CCCCCC::CUC: UCUC  CUC G
     chr4 65781 GAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAG---AAGCGCGCACACGCA---CACUCCCCCCCCCCUCUCUcUCUCUCCUCCG 65861
                ***************************99999998...567777777777777...8899999***********9899********* PP

RNAfold
>chr4_4
AGGAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAGAAGCGCGCACACG
CACACUCCCCCCCCCCUCUCUCUCUCUCCUCCGUUC
.((((.(((((((((((((((.(((.((...((((....(((......)))...)))))))))))))))))))))))))))).... (-54.50)

Length sequence

: 86

Length match:

79