chr4_40

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

28.2

E-value:

0.0029

From sequence:

158688

To sequence:

158789

Alignments:

                                                                              NC
                 ::::::::::<<<<<<<<-<<<<<<<~~~~~~>>>>>>>->>>>>>>>:::::::::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAG*[48]*CUcuCUcUCGuuGUCAuucaauuuuaua 102   
                  AU  U + UUGA A::GAGAGAGAG      CUCUCUCUC::U UCA  C  UUU+ + 
     chr4 158688 GAUGUUAUAUUGAGAGAGAGAGAGAG*[48]*CUCUCUCUCUCUCUCACGCUCUUUCUCU 158789
                 **************************...7..**************************** PP

>>

RNAfold
>chr4_40
AUGUUAUAUUGAGAGAGAGAGAGAGUUACACAGAAGACUUCCGCCAGACC
AGGGUCACACAGGUUGCUUCCCUCUCUCUCUCUCUCUCACGCUCUUUCUC
U
.........((((((((((((((((.......((((.(..((....(((....))).....))..)))))...))))))))))))))))............ (-36.30)

Length sequence

: 101

Length match:

100