chr4_41

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

28.1

E-value:

0.0032

From sequence:

158787

To sequence:

158686

Alignments:

                                           vvvvv                              vvvvv                             NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<------<<~~~~~~>>------>>-->>>>>>>>>>>>->>>>>>>>:::::::::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGcaucC*[14]*GgcuGugUACaugCGUGCUcuCUcUCGuuGUCAuucaauuuuaua 102   
                    AA  G  UGA A::GAGAGAGAG       G  AGCA CC      GG  GU U C  + +++CUCUCUCUC::U UCA+U  A+ +U++ 
     chr4 158787 AGAAAGAGCGUGAGAGAGAGAGAGAG-----AGGGAAGCAACC*[19]*GGAAGUCUUCUGUGUAACUCUCUCUCUCUCUCAAUAUAACAUCCG 158686
                 **************************.....667777777765...9..66667777777777777**************************** PP

>>

RNAfold
>chr4_41
GGAUGUUAUAUUGAGAGAGAGAGAGAGUUACACAGAAGACUUCCGCCAGA
CCAGGGUCACACAGGUUGCUUCCCUCUCUCUCUCUCUCUCACGCUCUUUC
U
...........((((((((((((((((.......((((.(..((....(((....))).....))..)))))...)))))))))))))))).......... (-36.30)

Length sequence

: 101

Length match:

100