chr4_42

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

45.4

E-value:

4.6e-05

From sequence:

67706

To sequence:

67820

Alignments:

                v  v      v            v                              v          v      v  v   NC
                <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929     1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuC*[ 5]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77   
                 GC :G:GUG G GUGUGUGUGU :G GUG GUGU:      :GU C CGC C: GCACACACCC CAC:C: GC C 
     chr4 67706 UGCACGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG*[43]*CGUACGCGCGCGAGCACACACCCCCACACGAGCCCA 67820
                **********************************97...*..799********************************* PP

>>

RNAfold
>chr4_42
GCACGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCCCUCUUCGUG
UUCUUGCGCUCCAUGGCUCGCUUGCUUGCGUACGCGCGCGAGCACACACC
CCCACACGAGCCCA
((.((((((.(.((((((((.((((((((((((((((.(((......((((....)))).....))).)))......))))))))))))).)))))))).).)))))).))... (-49.40)

Length sequence

: 114

Length match:

113