chr4_46

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

41.2

E-value:

0.00039

From sequence:

80609

To sequence:

80719

Alignments:

                v  v      v            v                               v          v      v  v   NC
                <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<_~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929     1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuCG*[ 4]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77   
                 G   G:GUG G GUGUGUGUGU :G GUG GUGU:       :GU C CGC C: GCACACACCC CAC:C   C C 
     chr4 80609 UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGC*[38]*CGUACGCGCGCGAGCACACACCCCCACACGAGCCCA 80719
                ********************************99975...*..89********************************** PP

>>

RNAfold
>chr4_46
GUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGCCCUCUUCGUGUUCU
UGCGCUCCAUGGCUCGCUUGCUUGCGUACGCGCGCGAGCACACACCCCCA
CACGAGCCCA
(((((.(.((((((((.((((((((((((((((.(((......((((....)))).....))).)))......))))))))))))).)))))))).).)))))....... (-45.40)

Length sequence

: 110

Length match:

109