chr4_5

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

31.4

E-value:

0.00039

From sequence:

154474

To sequence:

154559

Alignments:

                                v                                                     v                   NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<~~~~~~>>->>->>>>>>>>>>>->>--.>>->>>:::::::::::::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGG*[25]*CCUuCCCCCCCucCucCACCUg.GCGaaCUCCUACUCGUCCUU 106   
                    AG      G::G :A GGG:::::GGGAGGAG: GG      CCU:C CCCCC:::::C CCU  :  ::CUCC AC C   CU 
     chr4 154474 GGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGG*[ 4]*CCUCCUCCCCCCUUCUCCCCUCuCCCCUCUCCCACACACACUC 154559
                 *********99*999999********************9...8..9****************9997536689**************** PP

>>

RNAfold
>chr4_5
GGAGAAGGAGGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGGCGGUC
CUCCUCCUCCCCCCUUCUCCCCUCUCCCCUCUCCCACACACACUCAGAUC
GAUGG
......(((((..((((((((.(((((((((((((((((((((.....)))))))))).))))))))))))))))))).)))))..................... (-68.20)

Length sequence

: 105

Length match:

84