chr4_53

cmsearch-Rfam

Family :

MNV_3UTR

Id:

RF02532

Type:

Cis-reg;

Taxonomy:

Viruses;

Ontology:

Not found

Description:

not description

Score:

27.2

E-value:

0.0056

From sequence:

302084

To sequence:

302221

Alignments:

                                                                                                                 NC
                 <<<<<<--<<<-<<<-<<<<<<-<<<<-<<<<<<<-<<<-<<<_~~~~~~>>>.>>>->>>>-->>>->>>>->>>>>>->>>->>>-->>>>>> CS
  RF02532     25 GGaCgCuUgCCguCCCuuCGuGGaGGuUCCugGuCuccGCGcGA*[ 5]*CgC.CggaGaCcCAaGGCaCCuACaCGaaCGGaCGGcUuGcGuCC 117   
                 :G:C:C+ ::CGUC: :::GUG :GG: CC:::UC CC: GC:A      :GC :GG GA::  :GG :CC:ACAC:::C:GACG:: UG:G:C:
     chr4 302084 UGGCUCAGCGCGUCUGCGAGUGUCGGCCCCGCAUCCCCAUGCCA*[51]*GGCaUGGGGAUG--CGGGGCCGACACUCGCAGACGCGCUGAGCCA 302221
                 *******************************9999999976665...*..666689999999..9****************************** PP

RNAfold
>chr4_53
UACGUGGUUGCAUCCACAGCGAACGCACGACUUGGCCUCCGUGGCUCAGC
GCGUCUGCGAGUGUCGGCCCCGCAUCCCCAUGCCACAUACACACGCGGGC
GCAUGUGUGGGGGUGGGUGGGAGGAGGGGGGCAUGUGGCAUGGGGAUGCG
GGGCCGACACUCGCAGACGCGCUGAGCCACAACGCGGAGUGUAGUUGGGC
UGUUGCUCGGUUCAUUUCUUC
...((((......))))(((((..((.(((((..((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((.(((...(((....)))...))).))).............)))))))))))))))))))))))))))))))))))))))))))))).....)))))).))))))).))..))))).............. (-143.20)

Length sequence

: 221

Length match:

136