chr4_6

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

37.8

E-value:

4.4e-06

From sequence:

154561

To sequence:

154463

Alignments:

                            v                    v                                     v                    v     NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<---<<<<<________>>>>>>>>>->>->>>>>>>>>>>->>-->>->>>:::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGCCAaGuuCCCUCUGgCUGGaaCGCCCUuCCCCCCCucCucCACCUgGCGaaCUCCU 96    
                 CU AG  U U  :: G:  GGGGAG::GGGAG AG: GGG:  AG::::      C ::::C:CCC :C  CCCC::CUCC CC  :C :: UCCU
     chr4 154561 CUGAGUGUGUGUGG-GAGAGGGGAGAGGGGAGAAGGGGGGAGGAGGAGGAC----CGCCUCCUCCC-CCUCCCCCUUCUCCUCCCCUC-CCUUCCU 154473
                 *********99999.6666*************9999888888888877743....33777888887.66779************9666.999**** PP

                            NC
                 :::::::::: CS
  RF01918     97 ACUCGUCCUU 106   
                  CU  UCCU 
     chr4 154472 CCUUCUCCUC 154463
                 ********** PP

>>

RNAfold
>chr4_6
GGGGAGGAGAAGGAGGAAGGGAGGGGAGGAGAAGGGGGAGGGGGAGGAGG
CGGUCCUCCUCCUCCCCCCUUCUCCCCUCUCCCCUCUCCCACACACACUC
AGAUCG
..(..(((((.((.(((...(((((((((((..(((((((((((((((.....))))))))))))))))))))))))))))))))))))..).............. (-70.10)

Length sequence

: 106

Length match:

97