chr4_7

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

28.9

E-value:

0.0021

From sequence:

65774

To sequence:

65870

Alignments:

                                          v           v v   vvvv       vvvvv v          v                          NC
                :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<---<<<<<~~~~~>>>>>>>>>->>->>>>>>>>>>>->>-->>->>>::::::::: CS
  RF01918     1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGCCAaGuuCC*[8]*GGaaCGCCCUuCCCCCCCucCucCACCUgGCGaaCUCCUACUCG 101  
                  C GA  A  G:: G:  G:G::GG GGGAGGA:: G G  AAG  C:     :     C C ::CCCCCC CC::C :CU :C ::C  C   UC 
     chr4 65774 AACGGAGGAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAGAAGCGCG*[4]*C----GCACACUCCCCCCCCCCUC-UCUCUCUCUCCUCCGUUCU 65865
                *************************************999888886654..4..3....4556788888888888888.888899999999999**** PP

                       NC
                :::::  CS
  RF01918   102 UCCUU  107  
                U  UU 
     chr4 65866 UAUUU  65871
                *****  PP

>>

RNAfold
>chr4_7
AUCCAACGGAGGAGAGAGAGAGAGAGAGGGAGGGAGGAAGGGAGAGAAGC
GCGCACACGCACACUCCCCCCCCCCUCUCUCUCUCUCCUCCGUUCUUAUU
UGUGCA
....((((((((((((((((((((...(((.(((.....(((((....(((......)))...)))))))))))))))))))))))))))))))............ (-59.20)

Length sequence

: 106

Length match:

95