chr4_8

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

33.5

E-value:

8.6e-05

From sequence:

88055

To sequence:

88166

Alignments:

                               vv                                                                 vv               NC
                :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<---<<<<~~~~~~>>>>>>>>->>->>>>>>>>>>>->>-->>->>>:::::::::: CS
  RF01918     1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGCCAaGuuC*[10]*GaaCGCCCUuCCCCCCCucCucCACCUgGCGaaCUCCUACUCGU 102  
                C C   UU+  :U:G      ::A G:GGGAGG G: GGG:CA G::        ::C:CCC :C CCCCC:C U::     G G:A:U CU CU GU
     chr4 88055 CACCUUUUCCACUCGU-----CAAGGGGGGAGGGGGGGGGGCACGGAU*[25]*GUCCCCCCCCCUCCCCCCCUUUGG----GCGGAGUUCUUCUUGU 88162
                *************954.....666677777777777777777777765...9..567777777777777777666665....456************* PP

                     NC
                :::: CS
  RF01918   103 CCUU 106  
                   U
     chr4 88163 UUGU 88166
                **** PP

>>

RNAfold
>chr4_8
ACCUUUUCCACUCGUCAAGGGGGGAGGGGGGGGGGCACGGAUGAGAGGAG
AAAAUGUGCAUAAAUGCGUCCCCCCCCCUCCCCCCCUUUGGGCGGAGUUC
UUCUUGUUUGU
.....((((.((((....((((((((((((((((((.((.((((.(........).).)))...)).))))))))))))))))))...)))).)))).............. (-56.60)

Length sequence

: 111

Length match:

110