chr4_9

cmsearch-Rfam

Family :

mir-1280

Id:

RF02013

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02013

Description:

not description

Score:

39.1

E-value:

0.00043

From sequence:

283275

To sequence:

283367

Alignments:

                         v                                                                         v           NC
                 ::<<<<<<<<<-<-<<<<---<<<--<<<<<<<<-<<<-<--<<<~~~~~>->>-->->>>->>>>>>>>-->>>>>>>>>>>>>>>>>:::: CS
  RF02013      1 ucuGucccaccGcUGccacccuccccccuGccucAGuGUGccaGG*[6]*CACucACUCaCAgaggCaggcUggauggCgggugggaCaAcAG 94    
                 UC::UC   CC C :CC:CCCUCCCC::::C:UC :U: GC ::G     CA::C C :A:AGA:G::::  GGA:GG:GGG   GA::  AG
     chr4 283275 UCCCUCUUGCCUC-CCCCCCCUCCCCAUCUCUUCUCUC-GCGCUG*[8]*CAAGCGC-GAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAG 283367
                 ***********99.677778899999999999999888.777775..5..7777777.88899999999999999****************** PP

>>

RNAfold
>chr4_9
UCCCUCUUGCCUCCCCCCCCUCCCCAUCUCUUCUCUCGCGCUGGGGGUAA
GCAAGCGCGAGAGAAGAGAUGGGGAGGGGGGGGGGGAGGCAAGA
....(((((((((((((((((((((((((((((((((((((((........).))))))))))))))))))))))...)))))))))))))))) (-83.40)

Length sequence

: 94

Length match:

91