chr5_1

cmsearch-Rfam

Family :

Archaea_SRP

Id:

RF01857

Type:

Gene;

Taxonomy:

Bacteria; Archaea;

Ontology:

GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognitionRF01857

Description:

not description

Score:

50.1

E-value:

2.4e-09

From sequence:

350237

To sequence:

350076

Alignments:

                                v     v    v v                                                         v          NC
                 (((((---((((((((((((((((((((((((<<<<<.<<.<<<<<<.<<<<<____>>>>>....>>>>>>->>>>>>>,,..<<<<<<<---<< CS
  RF01857    110 uccccuGAccccccGuCCcgcgGGGccgGgcGgcggc.gg.gccccc.ccuCcGgAGgGagg....gggggcAccgccguua..ccggggcAACcc 196   
                 U:C::UGAC:C: :G :C:GC   GC G  : G::G: G: GCC: C CC:C:G AG:G:GG    G :GGC :C:C::U A  C:  GG:AAC::
     chr5 350237 UGCGUUGACGCGGUGCUCUGCUUGGCUG-UGUGUCGGuGUgGCCUGCcCCCCUGUAGAGGGGugucGUAGGCUACCCGUUGAagCGAGGGAAACCG 350143
                 **************************99.66655554222122222225666666666666532322223331223444433337779******** PP

                                               v      v v     v        v             NC
                 <<<----<<<____>>>---->>>>>>>>>>>>,))))))))))-))))))---))))))))))))) CS
  RF01857    197 gGcCAGGCCCGGAAGGGAGCAgCcgggccccggACgcCcggCGCUcgcgGGguagCgggggggggga 263   
                 GG:CAGGCC G AA GGA CA:CC:::CC  :G  : +C GC  U GC:G: U+ C: :G:G::G:A
     chr5 350142 GGUCAGGCCGGAAACGGAACAGCCCAUCCUGCGCACGUCCGCCGUUGCAGAAUCACGCCGCGGAGCA 350076
                 *****************************98886666778*************************** PP

RNAfold
>chr5_1
ACCCCCACCGCAAAGACCGGAGAAGCCGCGCCUCCGGAAAAGGUUUUGCG
ACGGCGCGUGGGGCUCAAGUGCGGUCAUGCUCCGCGGCGUGAUUCUGCAA
CGGCGGACGUGCGCAGGAUGGGCUGUUCCGUUUCCGGCCUGACCCGGUUU
CCCUCGCUUCAACGGGUAGCCUACGACACCCCUCUACAGGGGGGCAGGCC
ACACCGACACACAGCCAAGCAGAGCACCGCGUCAACGCAGCGCGCCACCC
UCGCUGGUCCACGACACCCCCGCUCCACCUAGGAAGCCCCCGAAGGUUAC
AGAGCAACGCUCCGGCU
................((((((..(((((((..((......))....))).))))((((((.((((...(((.((((((((....))))))))(((((.(((.....)))..)))))...((((((((.((....((((((.((.((((.(((..........))).)))).......(((((....)))))))))))))..)).))...))))))..))))))).)))))).....(((((.(.....).)))))(((...)))......((((.((((.((......))..))))....))))....)))))).. (-115.80)

Length sequence

: 317

Length match:

160