chr5_10

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

36.0

E-value:

0.00029

From sequence:

119982

To sequence:

119862

Alignments:

                                                             v          v                                         NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<~~~~~~>>>>>>>>>>>.->>>>>>>>>>-->>>-..>>>->>>>>::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGa*[77]*uCCCAUuCCuA.ucguUCucaggugCUCC..uuCCucuuCCUU 164   
                   +AGG A::AG: G::AGAGAG+ :::G:G:::GG :GGA:   ::      ::   :UCC:  UC:::C:C:::U CUCC  ::C :CU::C U
     chr5 119982 UGAAGGGAAGAGGGGGGAGAGAGAAGACGGGGGGGGGCGGAGAGAAG*[25]*CUCUUCUCCGCuUCCCCCCCGUCUCCUCCucUUCACCUCUCCU 119868
                 *****************************999999876666543332...8..33344566666357888999********7447899******** PP

                        NC
                 :::::: CS
  RF01911    165 uuaguU 170   
                 U ++  
     chr5 119867 UCGUGG 119862
                 ****** PP

>>

RNAfold
>chr5_10
GCAUAACGAGAACAAGGAGCAUGGCCACGAAGGAGAGGUGAAGAGGAGGA
GACGGGGGGGAAGCGGAGAAGAGAUGGCCACCGUCACUUACUCGCUCUCU
UCUCUCCGCCCCCCCCCGUCUUCUCUCUCCCCCCUCUUCCCUUCACCUUC
AUCGCCUCCCCACGUCUCCC
.......((((....(((((((((....((((((((((.(..((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))).)))..))))))..)))))....)))).).)))).....)))).. (-81.40)

Length sequence

: 170

Length match:

119