chr5_11

cmsearch-Rfam

Family :

mir-2238

Id:

RF01915

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01915

Description:

not description

Score:

30.0

E-value:

0.0039

From sequence:

85831

To sequence:

85969

Alignments:

                                    v                                                                              NC
                :::::::::::<<---<<<<<<--<<-<<<<-------<<<<--<<<-<<<<-<<<<<<__~~~~~~>>>>>>->>>>>>>-->>>>--->>>>->>- CS
  RF01915     1 aauuUUuUUCUGGuAaCuaGuCuacccuCucUCCCgUucaCuCuucuCGuCaGucgaugAu*[ 4]*uaucgaAuGaCagaucaGugcGcgaGaAggA 96   
                + +U   U CUGGU +CU:  C  :CC:C:: CCCG  C:CU  :C: GUC:G:C::U:A       :A::G: :GAC:G:  AG:GCGC::G:AG: 
     chr5 85831 UCCUCACUCCUGGUCUCUCUCC--UCCCCCUCCCCGCGCUCUUCACC-GUCGGCCUGUGAC*[23]*CACAGGGCGACGGUGAAGAGCGCGGGGAGGG 85942
                *************988854444..44566668899999999999999.***********96...9..***********************99999876 PP

                  v                         NC
                ->>>>>.>---..>>:::::::::::: CS
  RF01915    97 AGaCua.GCUU..CCgUGauaguguuU 120  
                 G  :A GC U  CC UG+  G + +U
     chr5 85943 GGAAGAcGCAUcgCCCUGUGCGCUGAU 85969
                66544446666669************* PP

RNAfold
>chr5_11
CCUCACUCCUGGUCUCUCUCCUCCCCCUCCCCGCGCUCUUCACCGUCGGC
CUGUGACUUUGACGAAUACAUGAGAGAAGGCACAGGGCGACGGUGAAGAG
CGCGGGGAGGGGGAAGACGCAUCGCCCUGUGCGCUGAU
((........))......((.(((((((((((((((((((((((((((.((((((.((((..(..........)..)))))))))).))))))))))))))))))))))))))).))(((((......)))))..... (-88.80)

Length sequence

: 138

Length match:

137