chr5_13

cmsearch-Rfam

Family :

mir-280

Id:

RF00801

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00801

Description:

not description

Score:

31.7

E-value:

0.00049

From sequence:

161771

To sequence:

161862

Alignments:

                      vv         v  vv                                            vv v            vv              NC
                 :<<<<<<<-<<<<<-<<<-<<<<<<<<<<<<<<<<-<<<<___.>>>>--->>>>>>>>>>>>>>>>>>>->>>>>---->>>>>>>::::::::: CS
  RF00801      1 UgGcccucAuGcauUuaCGuuGCauaugaaaugauAuuuaUAG.uaaaCAGauuauuuuauauGCagGuaUaugCaaguggagggCcuGuacauug 95    
                  G:::  :A::C::   C   GCAUA:::::::AUAU:UAUA  UA:A A AU:::::::UAUGCA+G  U::G:: GUG:  :::C G+   UUG
     chr5 161771 AGAUAGCAACACGCCUAC---GCAUACAUGCAUAUAUAUAUAUaUAUAUAUAUAUGCAUGUAUGCAUGGGUGCGUGGGUGUA-UAUCCGCUGUUUG 161862
                 **************9888...8999999999999999999984499999999999999999999999999******999987.9************ PP

>>

RNAfold
>chr5_13
CAGAUAGCAACACGCCUACGCAUACAUGCAUAUAUAUAUAUAUAUAUAUA
UAUGCAUGUAUGCAUGGGUGCGUGGGUGUAUAUCCGCUGUUUGUC
((((((((.((.((((((.((((((((((((((((((((....)))))))))))))))))))).)))))).))((((....)))))))))))).. (-47.90)

Length sequence

: 95

Length match:

90