chr5_14

cmsearch-Rfam

Family :

mir-280

Id:

RF00801

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00801

Description:

not description

Score:

29.1

E-value:

0.003

From sequence:

161843

To sequence:

161770

Alignments:

                      v   v                                                       v      v              NC
                 :<<<<<<<-<<<<<-<<<-<<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>>>>>->>>>>---->>>>>>>::::::::: CS
  RF00801      1 UgGcccucAuGcauUuaCGuuGCauaugaaaugau*[15]*auuauuuuauauGCagGuaUaugCaaguggagggCcuGuacauug 95    
                  :: C :C  :::: UAC :UGCAUAU::A:::AU      AU:::U::AUAUGCA:GUAU::::     G: G ::UG+   +UG
     chr5 161843 CACGCACC-CAUGCAUAC-AUGCAUAUAUAUAUAU*[ 0]*AUAUAUAUAUAUGCAUGUAUGCGUA----GGCGUGUUGCUAUCUG 161770
                 ********.789999999.9*******99988887......78888999********999999988....**************** PP

>>

RNAfold
>chr5_14
CCGGCGCACGCAGAUAGCAACACGCCUACGCAUACAUGCAUAUAUAUAUA
UAUAUAUAUAUAUGCAUGUAUGCAUGGGUGCGUGGGUGUAUAUCC
((.((((((.((....((.....))....((((((((((((((((((((....)))))))))))))))))))).)).)))))).))......... (-44.90)

Length sequence

: 95

Length match:

72