chr5_17

cmsearch-Rfam

Family :

mir-335

Id:

RF00766

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00766

Description:

not description

Score:

29.3

E-value:

0.0038

From sequence:

94430

To sequence:

94369

Alignments:

                                          v         v                            NC
                <<<<<<<-<<<<<<<<<-<<<<<<<<<<<_____>>>->>>>>>>>->>>>>>>>>->>>>>>> CS
  RF00766    12 GgGGuCaAGaGCaauaaCGaaaaacGuuuGUcAUaaaCCguuuuuCAuuauuGCuCCuGaCCcC 75   
                G:GG::A GA::AA::: :::A:::G UU  CAUAA CC:::U::: :::UU::UC U::CC:C
     chr5 94430 GAGGAAAUGAAGAAGUG-CGGAUGUGCUUUCCAUAAACCACAUCCG-CACUUCUUCAUUUCCUC 94369
                66666666666666666.566788999999********99887666.66666666666666666 PP

RNAfold
>chr5_17
GAGGAGGGUGUGCCGGAGGAAAUGAAGAAGUGCGGAUGUGGUUUAUGGAA
AGCACAUCCGCACUUCUUCAUUUCCUCUCUUGGCCUGCUAACG
.((.(((.((....((((((((((((((((((((((((((.(((....))).))))))))))))))))))))))))))..)).))).)).... (-55.80)

Length sequence

: 93

Length match:

60