chr5_18

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

41.5

E-value:

4.4e-08

From sequence:

119870

To sequence:

119976

Alignments:

                                             vv      v                          v      vv                         NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>:::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGa*[41]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccuc 131   
                 +A  GGUGA GAG  G AGAC:GGG::GA GC:GAG+A:: :AUGG:      :C+CUC:::U C C:GC  C::CCC:G CU CU UCUC CC+C
     chr5 119870 GAGAGGUGAAGAGGAGGAGACGGGGGGGAAGCGGAGAAGA-GAUGGC*[15]*GCUCUCUUCU-CUCCGCC-CCCCCCCGUCUUCUCUCUCCCCCC 119971
                 **********************************998888.****86...8..6887777777.89****9.99********************** PP

                       NC
                 ::::: CS
  RF00690    132 uuUuu 136   
                 U+UU+
     chr5 119972 UCUUC 119976
                 ***** PP

>>

RNAfold
>chr5_18
GCAUGGCCACGAAGGAGAGGUGAAGAGGAGGAGACGGGGGGGAAGCGGAG
AAGAGAUGGCCACCGUCACUUACUCGCUCUCUUCUCUCCGCCCCCCCCCG
UCUUCUCUCUCCCCCCUCUUCCCUUCACCUUCAUCG
..((((....((((((((((.(..((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))).)))..))))))..)))))....)))).. (-71.20)

Length sequence

: 136

Length match:

105