chr5_19

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

30.3

E-value:

0.00012

From sequence:

119974

To sequence:

119869

Alignments:

                                 v                     v                       v                     v            NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaG*[40]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccu 130   
                 A++ GG G  GAGA+  AGAC:GGG::   GC:GAG   : GA    G            C:   C C:GC  C::CCC:G CU CU  +++UC++
     chr5 119974 AGAGGGGGGAGAGAG-AAGACGGGGGG-GGGCGGAGAGAA-GAGA--G*[20]*-----UCUCUUCUCCGCUUCCCCCCCGUCUCCUCCUCUUCAC 119875
                 ***********9999.8*******999.689999664333.4433..3...6.......4566667899999************99********** PP

                        NC
                 :::::: CS
  RF00690    131 cuuUuu 136   
                 CU+U +
     chr5 119874 CUCUCC 119869
                 ****** PP

>>

RNAfold
>chr5_19
AGCAUGGCCACGAAGGAGAGGUGAAGAGGAGGAGACGGGGGGGAAGCGGA
GAAGAGAUGGCCACCGUCACUUACUCGCUCUCUUCUCUCCGCCCCCCCCC
GUCUUCUCUCUCCCCCCUCUUCCCUUCACCUUCAU
...........(((((.((((.(((((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))........))))))).)))).))))).. (-70.60)

Length sequence

: 135

Length match:

104