chr5_20

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.6

E-value:

0.0033

From sequence:

241196

To sequence:

241296

Alignments:

                                 vv  v                                            v  vv                  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<~~~~~~>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuG*[55]*CaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  +UUG UGA G GA ++A A AGGGAAGAG  :GAGCAUG      CAUGC C:  CUCUUCCCU     C+U+C++ C +C +  +
     chr5 241196 UGUUGUUGAAG-GACAAA-ACAGGGAAGAGCGGGAGCAUG*[25]*CAUGCCCCCGCUCUUCCCUCU---CCUGCAUCCGCCCCCCC 241296
                 ********999.666444.59*******************...9..******************965...9**************** PP

>>

RNAfold
>chr5_20
CGUCGCCUCGCUAAUGCUGUUGUUGAAGGACAAAACAGGGAAGAGCGGGA
GCAUGACGCGGACGGGGGUGGCGCACGCGUCAUGCCCCCGCUCUUCCCUC
UCCUGCAUCCGCCCCCCCCCCUCCUCCUCCCCUCUC
.........((..((((..(((((....)))))...(((((((((((((.((((((((((..((.......))..)))))))))).))))))))))))).....))))..))........................ (-57.60)

Length sequence

: 136

Length match:

99