chr5_21

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.3

E-value:

0.0021

From sequence:

94442

To sequence:

94353

Alignments:

                                                                                                                   NC
                ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::: CS
  RF00690     1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAc*[32]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuuc 124  
                A+  GG  A GAG   ::    G::A:GA:G AG+GC:::     G GCU UC A+       CC +C :::GCACU C:UC:U::C    ::C+ +C
     chr5 94442 AGCAGGCCAAGAG---AG----GAAAUGAAGAAGUGCGGA-U---GUGCUUUCCAU*[ 2]*ACC-ACAUCCGCACUUCUUCAUUUC----CUCCGGC 94365
                ***9999887754...33....568999*********999.3...67777777766...5..565.888999*********999875....4478999 PP

                             NC
                :::::::::::: CS
  RF00690   125 uCuccucuuUuu 136  
                +C+CC++ +U +
     chr5 94364 ACACCCUCCUCC 94353
                9999******** PP

>>

RNAfold
>chr5_21
CCGUGGUAGCGACCCGCGUAGGGGAGGAGGGUGUGCCGGAGGAAAUGAAG
AAGUGCGGAUGUGGUUUAUGGAAAGCACAUCCGCACUUCUUCAUUUCCUC
UCUUGGCCUGCUAACGGGGGGAGGGACAAAGUGUG
.....((..(..(((.(((..((.(((.((.....))((((((((((((((((((((((((((.(((....))).)))))))))))))))))))))))))).....))).)).))).)))..)..))........ (-70.00)

Length sequence

: 135

Length match:

88