chr5_23

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

46.5

E-value:

2.6e-05

From sequence:

242399

To sequence:

242547

Alignments:

                     v        v              v                    v             v       v       NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuC*[ 5]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 C::G G:GUGUG  UGUG GUG::UG:G GUGUG:C      G: CCAC C:CA::CAC CAC+CACAC:C C::GC+
     chr5 242399 CCUGCGUGUGUG--UGUGUGUGUGUGUGUGUGUGUC*[79]*GACCCACUCACACACACGCACACACACACACAGGCC 242547
                 ************..5888888888888888888887...*..7899*****************9************** PP

>>

RNAfold
>chr5_23
CUGCGUGUGUGUGUGUGUGUGUGUGUGUGUGUCUACUCCACCGAUCGAUA
GUGUGCAAUCGUGCCCAUUCCUCCGUGAGCAACGCCGACACGCGUGUAAC
CGGCGGUACACCGACCCACUCACACACACGCACACACACACACAGGCC
(((.(((((((((((((((((((((.(((.(((....((.(((....((((((((....(((((.(((......))).)).)))....))))).)))...))).))......))).))).))))))))))))))))))))).)))... (-71.80)

Length sequence

: 148

Length match:

147