chr5_24

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

41.1

E-value:

0.00042

From sequence:

242545

To sequence:

242397

Alignments:

                              v    v         v                      v         v   v               NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<__~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuCGC*[ 3]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 C::G G:GUGUG  UGUG GUG::UG:G GUG G:CG       G:  CAC C:CA::CAC CAC+CACAC:C C::G +
     chr5 242545 CCUGUGUGUGUG--UGUGCGUGUGUGUGAGUGGGUCGG*[77]*GACACACACACACACACACACACACACACGCAGGUC 242397
                 ************..6******************99985...*..9999*****************9************** PP

>>

RNAfold
>chr5_24
ACCUGCGUGUGUGUGUGUGUGUGUGUGUGUGUGUCUACUCCACCGAUCGA
UAGUGUGCAAUCGUGCCCAUUCCUCCGUGAGCAACGCCGACACGCGUGUA
ACCGGCGGUACACCGACCCACUCACACACACGCACACACACACACAGG
.((((.(((((((((((((((((((((.(((.(((....((.(((....((((((((....(((((.(((......))).)).)))....))))).)))...))).))......))).))).))))))))))))))))))))).)))) (-73.60)

Length sequence

: 148

Length match:

147