chr5_25

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

36.7

E-value:

0.004

From sequence:

391757

To sequence:

391896

Alignments:

                   v    v     v                 v          v                v    v    v     NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--~~~~~~-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUG*[ 9]*UCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :G GGG: :GU   UGUGUGUG::UG:G:G  UG      U   C:C:CA::CACACAC  AC: :CCC C: U
     chr5 391757 UGUGGGUGCGUGUGUGUGUGUGUGUGUGUGGAUG*[72]*UACUCACACACACACACACGUACGAACCCUCGAU 391896
                 ***********97666666666666666665544...9..7789***************9************** PP

>>

RNAfold
>chr5_25
GUGGGUGCGUGUGUGUGUGUGUGUGUGUGGAUGUCUUAUUUGGUUUUACA
CUUUUUUCUUUGGCGAGUAUAUGCUCCGUGAGUGCGCGAGGUUGGUGUGG
GCCCAUACUCACACACACACACACGUACGAACCCUCGAU
(.(((((((((((((((((((((.((((((..((((...........(((((.....(((((((((((....)))).......)).)))))..))))))))))))))).)))))))))))))))))....)))).)... (-58.60)

Length sequence

: 139

Length match:

138