chr5_29

cmsearch-Rfam

Family :

Protozoa_SRP

Id:

RF01856

Type:

Gene;

Taxonomy:

Eukaryota; Archaea;

Ontology:

GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognitionRF01856

Description:

not description

Score:

111.6

E-value:

1.5e-22

From sequence:

350305

To sequence:

350071

Alignments:

                               vv                         v           vvvvv  vvvv  v                       vv   v NC
                 :::::::::::<<<<>>>>----------------------((((((------(((((.-((((((((--------((((((((((-((((((((( CS
  RF01856      1 ucucgCUGUaACcugcagGGGucuuguguGUguaAuggggacccccuaGaCcagcucc.agcucggcgugaguuGAcccuccGcCcAuugcaggac 95    
                 U  C+CUGUAACC:  :GGGG +U+ U++GUG+A++GGGG+ ::C:U+GACCAGC+++  ++ CG: :UG+GUUGAC:C:: GC:C U::  GG: 
     chr5 350305 UUGCUCUGUAACCUUCGGGGGCUUCCUAGGUGGAGCGGGGGUGUCGUGGACCAGCGAGgGUGGCGCGCUGCGUUGACGCGGUGCUC-UGCUUGGCU 350211
                 ****************************************9*********************************************.********* PP

                       v vv   vv v  v              v  v vv   vv v        v v                                      NC
                 ((((((<<<<<<.<<<<<<<<<<<<____>>>>>>>>>>>>.>>>>>>,.,<___><<<<<<<---<<<<<----<<<____>>>---->>>>>>> CS
  RF01856     96 cucaGUccccgg.gggugCuccgcuGuAgagcggaGcaccc.ccgggga.auaaaggggcgcgaACcgCcccAGGCUGGaAACAGAGCAggGaaag 188   
                 ::::GU :  G:   : :C CC:CUGUAGAG:GG G: :   :C  :    U AAG G :G::AACC::::CAGGC:GGAAAC:GA CA::::A::
     chr5 350210 GUGUGUCGGUGUgGCCUGCCCCCCUGUAGAGGGGUGUCGUAgGCUACCCgUUGAAGCGAGGGAAACCGGGUCAGGCCGGAAACGGAACAGCCCAUC 350115
                 ******55548889********************98776665555554435666666889999999****************************99 PP

                   v v      v     vv                 v  vvvvvvvvv     v NC
                 >>>>>))))))).)))-)))))))---))))))))))))))))))))))))))) CS
  RF01856    189 cgcccGCugagg.uccGugcaagGAUcaCggagggcgccgagcggagcaggggg 241   
                 C: C GC::::  :CCG  ::AG:AUCAC ::G:G: :C         A:G:: 
     chr5 350114 CUGC-GCACGUCcGCCGUUGCAGAAUCACGCCGCGGAGC---------AUGACC 350071
                 9777.9****999****9*****************6554.........888888 PP

RNAfold
>chr5_29
GCGGUCAUGCUCCGCGGCGUGAUUCUGCAACGGCGGACGUGCGCAGGAUG
GGCUGUUCCGUUUCCGGCCUGACCCGGUUUCCCUCGCUUCAACGGGUAGC
CUACGACACCCCUCUACAGGGGGGCAGGCCACACCGACACACAGCCAAGC
AGAGCACCGCGUCAACGCAGCGCGCCACCCUCGCUGGUCCACGACACCCC
CGCUCCACCUAGGAAGCCCCCGAAGGUUACAGAGCAACGC
((((.......)))).((((..(((((....(((((..(((((..((((.((((((((.((....((((((.((.((((.(((..........))).)))).......(((((....)))))))))))))..)).))...)))))).(((.(((...(((((.......))))).....)))))).)))).)).)))..)))))..((((.((......))..))))..)))))..)))) (-82.00)

Length sequence

: 240

Length match:

233