chr5_31

cmsearch-Rfam

Family :

snoR125

Id:

RF02409

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF02409

Description:

not description

Score:

30.8

E-value:

0.0004

From sequence:

119831

To sequence:

120042

Alignments:

                         vv                 v            v          v vv     v                                    NC
                 [[[[----[[[[[,,,,,,,((((,,<<<<<~~~~~~>>>>>,<<<-<<<<<<<<---<<<<<<<<<<<<<<-----<<<<<<<-<<<<-<_     CS
  RF02409      1 GGGcGaUGauuaaAAAGAGAGaGGaUugaGa*[18]*uCucaUgGgAgggggaaaaaAagccCaaaucgaaaUCGAaGGagaaauacauUug     104   
                 ::GCG UG  UAA  AGA  :AGGA : :G:      :C: : :GGAG:GG :  A A::  :A:A::G:::  GAAG:::A:A+::::U:G
     chr5 119831 AUGCGUUGCAUAACGAGAACAAGGAGCAUGG*[ 0]*CCACGAAGGAGAGGUGA-AGAGGAGGAGACGGGGG-GGAAGCGGAGAAGAGAUGG     119914
                 ***************************9997......7999*******977655.57888889999999999.69**************986     PP

                                                     v   vv v                                 vv          NC
                 ~~~~~~>>>>>--->>>>>>>--->>>>>>>>>->>>>>->>>>>>--->>>>>,,,)))),<<~~~~~~>>,,]]]]]----]]]]: CS
  RF02409    105 *[ 3]*aauguUuUuuuuuCCcuUuuucgauuuaGggcucuuucccUCAuccCuuuCCCuCGgu*[17]*acACuugauAUGAgCCCU 200   
                       :::::UU U:U:::CC  :::C::U:U :  ::+  : CCUC :CCC:U  CCU: :U      A:  UUG   UG GC:: 
     chr5 119915 *[17]*CUCUCUUCUCUCCGCCCCCCCCCGUCUUCUCUCUCCCCCCUCUUCCCUUCACCUUCAU*[35]*ACCUUUGGUGUGUGCAUG 120042
                 ...9..79******************99999996655555667788***************876...9..5677999999******** PP

>>

RNAfold
>chr5_31
UGCGUUGCAUAACGAGAACAAGGAGCAUGGCCACGAAGGAGAGGUGAAGA
GGAGGAGACGGGGGGGAAGCGGAGAAGAGAUGGCCACCGUCACUUACUCG
CUCUCUUCUCUCCGCCCCCCCCCGUCUUCUCUCUCCCCCCUCUUCCCUUC
ACCUUCAUCGCCUCCCCACGUCUCCCCUCUCGCUUGCGCGCCUACCUUUG
GUGUGUGCAUG
............(((((....((((.(((((...(((((.((((.(((((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))........))))))).)))).)))))...))).......))))))..)))))..((((((((((....))).))))))).. (-94.30)

Length sequence

: 211

Length match:

210