chr5_32

cmsearch-Rfam

Family :

snoR125

Id:

RF02409

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF02409

Description:

not description

Score:

27.5

E-value:

0.0031

From sequence:

119974

To sequence:

119871

Alignments:

                          v     v                            v  v       v   v                             v   v   NC
                 <<<-<<<<<<<<---<<<<<<<<<<<<<<-----<<<<<<<-<<<<-<__~~~~~>..>>>>--->>>>>>>--->>>>>>>>>->>>>>->>>>> CS
  RF02409     56 gGgAgggggaaaaaAagccCaaaucgaaaUCGAaGGagaaauacauUugA*[2]*a..auguUuUuuuuuCCcuUuuucgauuuaGggcucuuucc 146   
                 :G: G::G: :A A  :::C:::::G ::  GA :GA::A:+:C : U+A        : G: +U:U::UC:C  :: C::::: G::: CU: :C
     chr5 119974 AGAGGGGGGAGAGAGAAGACGGGGGGGGGCGGAGAGAAGAGAGCGAGUAA*[5]*-ggUGGCCAUCUCUUCUCCGCUUCCCCCCCGUCUCCUCCUC 119880
                 ************9*****************************99776655..4...4477999********************************* PP

                           NC
                 >--->>>>> CS
  RF02409    147 cUCAuccCu 155   
                 :UCA:C:C:
     chr5 119879 UUCACCUCU 119871
                 ********* PP

RNAfold
>chr5_32
GUUAGAAAUGCGUUGCAUAACGAGAACAAGGAGCAUGGCCACGAAGGAGA
GGUGAAGAGGAGGAGACGGGGGGGAAGCGGAGAAGAGAUGGCCACCGUCA
CUUACUCGCUCUCUUCUCUCCGCCCCCCCCCGUCUUCUCUCUCCCCCCUC
UUCCCUUCACCUUCAUCGCCUCCCCACGUCUCCCCUCUCGCUUGCGCGC
.........((((.(((...(((((....((((.(((((...(((((.((((.(((((((((((((((((((((..(((((((.((((.(((...............))).)))).))))))).))))))))))))))........))))))).)))).)))))...))).......))))))..)))))..))))))) (-90.80)

Length sequence

: 199

Length match:

102