chr5_33

cmsearch-Rfam

Family :

snoTBR17

Id:

RF00294

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00294

Description:

TBR17 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

122.7

E-value:

1.4e-30

From sequence:

436434

To sequence:

436554

Alignments:

                                                                                                                  NC
                 ::::::::::<<_________________...________________________________________________________________ CS
  RF00294      1 UGCucucaGuGgaCaUGAuGCuCCGCCGC...CcauauaUCCCGuUAuGcAUAUCCUGUGUGCGCUCuAGcuCCgUuGGggCCaUGAaGAGUcaGC 93    
                 UGC +   G+G:+C+UGA+GC+CCGCC C   CC+++++UCCCGUUA+GCAUAUCCUGUGUGCGCUC+AGC+CCGU+GGGGCCAUGA+GAGUC+GC
     chr5 436434 UGCCUCGCGCGCGCCUGACGCACCGCCACgcgCCGCGGUUCCCGUUACGCAUAUCCUGUGUGCGCUCCAGCCCCGUCGGGGCCAUGACGAGUCCGC 436529
                 ************************************************************************************************ PP

                                            NC
                 ________________________>> CS
  RF00294     94 AaAuaAACCAUGCaUUAuACAUuacC 119   
                 AA ++AACCAUGC+UUA+ACAUU+:C
     chr5 436530 AA-CCAACCAUGCGUUACACAUUGCC 436554
                 **.9********************** PP

RNAfold
>chr5_33
GCCUCGCGCGCGCCUGACGCACCGCCACGCGCCGCGGUUCCCGUUACGCA
UAUCCUGUGUGCGCUCCAGCCCCGUCGGGGCCAUGACGAGUCCGCAACCA
ACCAUGCGUUACACAUUGCC
...(((((.((((.((.((...)).)).))))))))).....((.((((((......((((.(((((((((((...)))))..))..)))).)))).......)))))).))........ (-40.30)

Length sequence

: 120

Length match:

119