chr5_34

cmsearch-Rfam

Family :

snoTBR5

Id:

RF00292

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00292

Description:

TBR5 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

99.7

E-value:

4.9e-25

From sequence:

436127

To sequence:

436215

Alignments:

                                                                                                                  NC
                 <<________________________________________________._______.___________________________________>> CS
  RF00292      1 GAaaUGAUcGACAcCUAGGCuGAUGUAAAGCCGUCGCAGAUGGACGUUGA.UguCucA.GCcGUGAAAaCAacaCUAUUUuacGCCucGuCUGAUC 94    
                 GA+AUGAUCGACACCUAGG UGAUGUAAAGCCGUCGCAGAUGGAC UUGA UG+C+CA GCCGUGAAA+C AC+C       CGCCUCGUCUGAUC
     chr5 436127 GACAUGAUCGACACCUAGGUUGAUGUAAAGCCGUCGCAGAUGGACAUUGAgUGGCGCAcGCCGUGAAACCGACCC-------CGCCUCGUCUGAUC 436215
                 ***************************************************************************.......************** PP

>>

RNAfold
>chr5_34
CUGACAUGAUCGACACCUAGGUUGAUGUAAAGCCGUCGCAGAUGGACAUU
GAGUGGCGCACGCCGUGAAACCGACCCCGCCUCGUCUGAUCGCG
......((((((((.....(((((((((....(((((...)))))))))....((((....))))......))))).......))).))))).. (-18.70)

Length sequence

: 94

Length match:

87