chr5_35

cmsearch-Rfam

Family :

snoTBR5

Id:

RF00292

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00292

Description:

TBR5 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

35.6

E-value:

8.1e-06

From sequence:

437633

To sequence:

437675

Alignments:

                  v                                              v  NC
                 <<________________________________________~~~~~~>> CS
  RF00292      1 GAaaUGAUcGACAcCUAGGCuGAUGUAAAGCCGUCGCAGAUG*[50]*UC 94    
                 G +AUGAUCGACACCUAGG UGAUG AAAGCCGUCGCAGAUG       C
     chr5 437633 GACAUGAUCGACACCUAGGUUGAUG-AAAGCCGUCGCAGAUG*[ 0]*AC 437675
                 ************************9.789***********97......** PP

RNAfold
>chr5_35
CCGUGCGUGCCCGCCGCUGCGCGCUGACAUGAUCGACACCUAGGUUGAUG
AAAGCCGUCGCAGAUGACAUGAGNNNNNNNNNNNNNNNNNNNNN
.((.(((....)))))(((((((((......((((((......))))))...)).)).)))))............................... (-20.10)

Length sequence

: 94

Length match:

41