chr5_36

cmsearch-Rfam

Family :

snoTBR7

Id:

RF00295

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00295

Description:

TBR7 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

86.3

E-value:

1.6e-16

From sequence:

435882

To sequence:

435954

Alignments:

                                                                                              NC
                 ::::::::::::::::::::::::::::::::::<<<____>>>:::::::::::::::::::::::::::::::: CS
  RF00295      1 uAuAUGAUGAUUGACuguAACAUCACAGACUUUGacgAaCCcguGAGaaAGaAACaaUGUcGCcCCAGUCUGAcuu 76    
                 +A AUGAUGAUUGACUGUAACAUCACAGACUUUG:::   C:::++GA+AG AAC AUGUCGCCCCAGUCUGAC+U
     chr5 435882 CAGAUGAUGAUUGACUGUAACAUCACAGACUUUGAGU---CGCGAUGAUAGCAACCAUGUCGCCCCAGUCUGACGU 435954
                 *************************************...************************************ PP

>>

RNAfold
>chr5_36
ACAGAUGAUGAUUGACUGUAACAUCACAGACUUUGAGUCGCGAUGAUAGC
AACCAUGUCGCCCCAGUCUGACGUGC
...........(((.((((..((((.(.((((...))))).))))))))))).(((((((........))))))). (-16.20)

Length sequence

: 76

Length match:

71